VDR
Information VDR
- Description
This gene encodes vitamin D3 receptor, which is a member of the nuclear hormone receptor superfamily of ligand-inducible transcription factors. This receptor also functions as a receptor for the secondary bile acid, lithocholic acid. Downstream targets of vitamin D3 receptor are principally involved in mineral metabolism, though this receptor regulates a variety of other metabolic pathways, such as those involved in immune response and cancer. Mutations in this gene are associated with type II vitamin D-resistant rickets. A single nucleotide polymorphism in the initiation codon results in an alternate translation start site three codons downstream. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. A recent study provided evidence for translational readthrough in this gene, and expression of an additional C-terminally extended isoform via the use of an alternative in-frame translation termination codon. [provided by RefSeq, Jun 2018]
- Full Name
vitamin D receptor
- Source NCBI
ReMap Statistics
- Datasets
- 16
- Biotypes
- 5
- Peaks
- 140,252
- Non-redundant peaks
- 102,067
TF Classification
- Super Class
- Zinc-coordinating DNA-binding domains
- Class
- Nuclear receptors with C4 zinc fingers
- Familly
- Thyroid hormone receptor-related factors (NR1)
- Sub Familly
- Vitamin D receptor (NR1I)
Source TFClass
External IDs
- JASPAR
- MA0693
- Ensembl
- ENSG00000111424
- UniProt
- P11473
- Genevisible
- P11473
- RefSeq
- NM_000376
- Aliases
- NR1I1; PPP1R163
Datasets Table for VDR
Target name | Target modification | Ecotype/Strain | Biotype | Biotype modification | Source | Species | Experiment | Peaks |
---|---|---|---|---|---|---|---|---|
VDR | LCLGM10861 | CALCITRIOL | GEO | Homo sapiens | GSE22484 | 6,003 | ||
VDR | LNCaP | GEO | Homo sapiens | GSE64656 | 21,327 | |||
VDR | LS180 | GEO | Homo sapiens | GSE31939 | 1,173 | |||
VDR | LS180 | 125 | GEO | Homo sapiens | GSE31939 | 6,130 | ||
VDR | LX2 | GEO | Homo sapiens | GSE38103 | 2,449 | |||
VDR | LX2 | CALCIPOTRIOL | GEO | Homo sapiens | GSE38103 | 2,065 | ||
VDR | LX2 | CALCIPOTRIOL_TGFB1 | GEO | Homo sapiens | GSE38103 | 28,598 | ||
VDR | THP-1 | GEO | Homo sapiens | GSE51181 | 9 | |||
VDR | THP-1 | 1H_125D | GEO | Homo sapiens | GSE51181 | 170 | ||
VDR | THP-1 | 2H_125D | GEO | Homo sapiens | GSE51181 | 249 | ||
VDR | THP-1 | GEO | Homo sapiens | GSE53041 | 316 | |||
VDR | THP-1 | CAL | GEO | Homo sapiens | GSE53041 | 1,039 | ||
VDR | THP-1 | 1d_1-25-OH-2D3 | GEO | Homo sapiens | GSE89431 | 57,025 | ||
VDR | THP-1 | 2h_1-25-OH-2D3 | GEO | Homo sapiens | GSE89431 | 3,720 | ||
VDR | THP-1 | EtOH_1d | GEO | Homo sapiens | GSE89431 | 8,672 | ||
VDR | THP-1 | EtOH_2h | GEO | Homo sapiens | GSE89431 | 1,307 | ||
Target name | Target modification | Ecotype/Strain | Biotype | Biotype modification | Source | Species | Experiment | Peaks |