RFX5
Information RFX5
- Description
A lack of MHC-II expression results in a severe immunodeficiency syndrome called MHC-II deficiency, or the bare lymphocyte syndrome (BLS; MIM 209920). At least 4 complementation groups have been identified in B-cell lines established from patients with BLS. The molecular defects in complementation groups B, C, and D all lead to a deficiency in RFX, a nuclear protein complex that binds to the X box of MHC-II promoters. The lack of RFX binding activity in complementation group C results from mutations in the RFX5 gene encoding the 75-kD subunit of RFX (Steimle et al., 1995). RFX5 is the fifth member of the growing family of DNA-binding proteins sharing a novel and highly characteristic DNA-binding domain called the RFX motif. Multiple alternatively spliced transcript variants have been found but the full-length natures of only two have been determined. [provided by RefSeq, Jul 2008]
- Full Name
regulatory factor X5
- Source NCBI
ReMap Statistics
- Datasets
- 9
- Biotypes
- 9
- Peaks
- 79,364
- Non-redundant peaks
- 50,319
TF Classification
- Super Class
- Helix-turn-helix domains
- Class
- Fork head / winged helix factors
- Familly
- RFX-related factors
- Sub Familly
- None
Source TFClass
External IDs
- JASPAR
- MA0510
- Ensembl
- ENSG00000143390
- UniProt
- P48382
- Genevisible
- P48382
- RefSeq
- NM_000449
- Aliases
Datasets Table for RFX5
Target name | Target modification | Ecotype/Strain | Biotype | Biotype modification | Source | Species | Experiment | Peaks |
---|---|---|---|---|---|---|---|---|
RFX5 | GM12878 | ENCODE | Homo sapiens | ENCSR000DZW | 1,151 | |||
RFX5 | A-549 | ENCODE | Homo sapiens | ENCSR064LJN | 5,152 | |||
RFX5 | Hep-G2 | ENCODE | Homo sapiens | ENCSR000EEA | 14,171 | |||
RFX5 | IMR-90 | ENCODE | Homo sapiens | ENCSR000EFD | 5,855 | |||
RFX5 | K-562 | ENCODE | Homo sapiens | ENCSR000EGO | 2,334 | |||
RFX5 | MCF-7 | ENCODE | Homo sapiens | ENCSR924TVL | 10,185 | |||
RFX5 | SK-N-SH | ENCODE | Homo sapiens | ENCSR000EHY | 6,132 | |||
RFX5 | WA01 | ENCODE | Homo sapiens | ENCSR000ECF | 1,883 | |||
RFX5 | HeLa-S3 | ENCODE | Homo sapiens | ENCSR000ECX | 32,501 | |||
Target name | Target modification | Ecotype/Strain | Biotype | Biotype modification | Source | Species | Experiment | Peaks |