OTX2

Information OTX2

Description

This gene encodes a member of the bicoid subfamily of homeodomain-containing transcription factors. The encoded protein acts as a transcription factor and plays a role in brain, craniofacial, and sensory organ development. The encoded protein also influences the proliferation and differentiation of dopaminergic neuronal progenitor cells during mitosis. Mutations in this gene cause syndromic microphthalmia 5 (MCOPS5) and combined pituitary hormone deficiency 6 (CPHD6). This gene is also suspected of having an oncogenic role in medulloblastoma. Alternative splicing results in multiple transcript variants encoding distinct isoforms. Pseudogenes of this gene are known to exist on chromosomes two and nine. [provided by RefSeq, Jul 2012]

Full Name

orthodenticle homeobox 2

Source NCBI

ReMap Statistics

Datasets
9
Biotypes
3
Peaks
950,092
Non-redundant peaks
282,579

TF Classification

Super Class
Helix-turn-helix domains
Class
Homeo domain factors
Familly
Paired-related HD factors
Sub Familly
OTX

Source TFClass

External IDs

JASPAR
MA0712
Ensembl
ENSG00000165588
UniProt
P32243
Genevisible
P32243
RefSeq
NM_001270523
Aliases
CPHD6; MCOPS5
All peaks OTX2
Download BED file
Non redundant peaks OTX2
Download BED file
SEQUENCES OTX2
Download FASTA file
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Datasets Table for OTX2

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
OTX2 retina pigment GEO Homo sapiens GSE60024 15,952
OTX2 D283-Med GEO Homo sapiens GSE92582 119,339
OTX2 D283-Med shGFP GEO Homo sapiens GSE92582 154,444
OTX2 D283-Med shOTX2-1393 GEO Homo sapiens GSE92582 123,308
OTX2 D341-Med GEO Homo sapiens GSE92582 99,716
OTX2 D341-Med CRISPR-GFP1 GEO Homo sapiens GSE92582 126,232
OTX2 D341-Med CRISPR-OTX2 GEO Homo sapiens GSE92582 92,619
OTX2 D341-Med shGFP GEO Homo sapiens GSE92582 115,909
OTX2 D341-Med shOTX2-1393 GEO Homo sapiens GSE92582 102,573
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks

ReMap is a database of transcriptional regulators peaks derived from curated ChIP-seq, ChIP-exo, DAP-seq experiments in Human and Thaliana.

You are using the 2020 ReMap (3rd) release.
The ReMap catalogues (2020, 2018, 2015) are under CC BY-NC 4.0 international license, while ReMapEnrich, remap-pipeline under GNU GPLv3 licence.

Inserm TAGC
AMU AMU-MESO

This work was granted access to the HPC resources of Aix-Marseille Université financed by the project Equip@Meso (ANR-10-EQPX-29-01) of the program "Investissements d’Avenir" supervised by the Agence Nationale de la Recherche.