MBD1

Information MBD1

Description

The protein encoded by this gene is a member of a family of nuclear proteins related by the presence of a methyl-CpG binding domain (MBD). These proteins are capable of binding specifically to methylated DNA, and some members can also repress transcription from methylated gene promoters. This protein contains multiple domains: MBD at the N-terminus that functions both in binding to methylated DNA and in protein interactions; several CXXC-type zinc finger domains that mediate binding to non-methylated CpG dinucleotides; transcriptional repression domain (TRD) at the C-terminus that is involved in transcription repression and in protein interactions. Numerous alternatively spliced transcript variants encoding different isoforms have been noted for this gene.[provided by RefSeq, Feb 2011]

Full Name

methyl-CpG binding domain protein 1

Source NCBI

ReMap Statistics

Datasets
2
Biotypes
1
Peaks
35,551
Non-redundant peaks
26,238

TF Classification

Super Class
Zinc-coordinating DNA-binding domains
Class
CXXC zinc finger factors
Familly
CpG-binding proteins
Sub Familly
None

Source TFClass

External IDs

JASPAR
Ensembl
ENSG00000141644
UniProt
Q9UIS9
Genevisible
Q9UIS9
RefSeq
NM_001204136
Aliases
CXXC3; PCM1; RFT
All peaks MBD1
Download BED file
Non redundant peaks MBD1
Download BED file
SEQUENCES MBD1
Download FASTA file
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Datasets Table for MBD1

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
MBD1 Hep-G2 ENCODE Homo sapiens ENCSR260UJI 20,908
MBD1 ISOF1 Hep-G2 ENCODE Homo sapiens ENCSR396QWK 14,643
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks

ReMap is a database of transcriptional regulators peaks derived from curated ChIP-seq, ChIP-exo, DAP-seq experiments in Human and Thaliana.

You are using the 2020 ReMap (3rd) release.
The ReMap catalogues (2020, 2018, 2015) are under CC BY-NC 4.0 international license, while ReMapEnrich, remap-pipeline under GNU GPLv3 licence.

Inserm TAGC
AMU AMU-MESO

This work was granted access to the HPC resources of Aix-Marseille Université financed by the project Equip@Meso (ANR-10-EQPX-29-01) of the program "Investissements d’Avenir" supervised by the Agence Nationale de la Recherche.