KDM1A

Information KDM1A

Description

This gene encodes a nuclear protein containing a SWIRM domain, a FAD-binding motif, and an amine oxidase domain. This protein is a component of several histone deacetylase complexes, though it silences genes by functioning as a histone demethylase. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2009]

Full Name

lysine demethylase 1A

Source NCBI

ReMap Statistics

Datasets
22
Biotypes
11
Peaks
604,194
Non-redundant peaks
316,295

TF Classification

Super Class
Unknown
Class
Unknown
Familly
Unknown
Sub Familly
Unknown

Source TFClass

External IDs

JASPAR
Ensembl
ENSG00000004487
UniProt
O60341
Genevisible
O60341
RefSeq
NM_001009999
Aliases
AOF2; BHC110; CPRF; KDM1; KIAA0601; LSD1
All peaks KDM1A
Download BED file
Non redundant peaks KDM1A
Download BED file
SEQUENCES KDM1A
Download FASTA file
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Datasets Table for KDM1A

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
KDM1A A-549 ENCODE Homo sapiens ENCSR639GWS 11,177
KDM1A Hep-G2 ENCODE Homo sapiens ENCSR115BLD 117,928
KDM1A K-562 ENCODE Homo sapiens ENCSR000ATX 15,393
KDM1A K-562 ENCODE Homo sapiens ENCSR360HRA 20,970
KDM1A K-562 ENCODE Homo sapiens ENCSR908CMW 34,794
KDM1A WA01 ENCODE Homo sapiens ENCSR418RRF 97,441
KDM1A HeLa GEO Homo sapiens GSE45441 3,299
KDM1A keratinocyte diff GEO Homo sapiens GSE57702 20,908
KDM1A SKNO1 DMSO GEO Homo sapiens GSE71739 4,962
KDM1A SKNO1 GSK690 GEO Homo sapiens GSE71739 27,744
KDM1A SKNO1 RN1 GEO Homo sapiens GSE71739 26,643
KDM1A Kasumi-1 DMSO GEO Homo sapiens GSE71739 38,193
KDM1A Kasumi-1 GSK690 GEO Homo sapiens GSE71739 32,916
KDM1A Kasumi-1 RN1 GEO Homo sapiens GSE71739 39,947
KDM1A NCI-H526 DMSO GEO Homo sapiens GSE66297 35,002
KDM1A 8A SH-SY5Y B0_SHLSD18A GEO Homo sapiens GSE58258 139
KDM1A 8A SH-SY5Y B3_SHCTR GEO Homo sapiens GSE58258 949
KDM1A 8A SH-SY5Y B3_SHLSD18A GEO Homo sapiens GSE58258 102
KDM1A SH-SY5Y B0 GEO Homo sapiens GSE58258 17,385
KDM1A SH-SY5Y B0_SHLSD18A GEO Homo sapiens GSE58258 12,219
KDM1A SH-SY5Y B3 GEO Homo sapiens GSE58258 44,347
KDM1A T-47D-MTVL GEO Homo sapiens GSE64467 1,736
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks

ReMap is a database of transcriptional regulators peaks derived from curated ChIP-seq, ChIP-exo, DAP-seq experiments in Human and Thaliana.

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The ReMap catalogues (2020, 2018, 2015) are under CC BY-NC 4.0 international license, while ReMapEnrich, remap-pipeline under GNU GPLv3 licence.

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This work was granted access to the HPC resources of Aix-Marseille Université financed by the project Equip@Meso (ANR-10-EQPX-29-01) of the program "Investissements d’Avenir" supervised by the Agence Nationale de la Recherche.