BRCA1

Information BRCA1

Description

This gene encodes a nuclear phosphoprotein that plays a role in maintaining genomic stability, and it also acts as a tumor suppressor. The encoded protein combines with other tumor suppressors, DNA damage sensors, and signal transducers to form a large multi-subunit protein complex known as the BRCA1-associated genome surveillance complex (BASC). This gene product associates with RNA polymerase II, and through the C-terminal domain, also interacts with histone deacetylase complexes. This protein thus plays a role in transcription, DNA repair of double-stranded breaks, and recombination. Mutations in this gene are responsible for approximately 40% of inherited breast cancers and more than 80% of inherited breast and ovarian cancers. Alternative splicing plays a role in modulating the subcellular localization and physiological function of this gene. Many alternatively spliced transcript variants, some of which are disease-associated mutations, have been described for this gene, but the full-length natures of only some of these variants has been described. A related pseudogene, which is also located on chromosome 17, has been identified. [provided by RefSeq, May 2009]

Full Name

BRCA1 DNA repair associated

Source NCBI

ReMap Statistics

Datasets
9
Biotypes
9
Peaks
72,574
Non-redundant peaks
55,924

TF Classification

Super Class
Unknown
Class
Unknown
Familly
Unknown
Sub Familly
Unknown

Source TFClass

External IDs

JASPAR
Ensembl
ENSG00000012048
UniProt
P38398
Genevisible
P38398
RefSeq
NM_007294
Aliases
BRCAI; BRCC1; BROVCA1; FANCS; IRIS; PNCA4; PPP1R53; PSCP; RNF53
All peaks BRCA1
Download BED file
Non redundant peaks BRCA1
Download BED file
SEQUENCES BRCA1
Download FASTA file
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Datasets Table for BRCA1

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
BRCA1 GM12878 ENCODE Homo sapiens ENCSR000DZS 486
BRCA1 A-549 ENCODE Homo sapiens ENCSR857KDI 2,325
BRCA1 Hep-G2 ENCODE Homo sapiens ENCSR000EDY 4,011
BRCA1 K-562 ENCODE Homo sapiens ENCSR223MLH 27,174
BRCA1 WA01 ENCODE Homo sapiens ENCSR000EBX 2,361
BRCA1 HeLa-S3 ENCODE Homo sapiens ENCSR000EDB 13,006
BRCA1 U2OS GEO Homo sapiens GSE87324 3,583
BRCA1 MCF-10A GEO Homo sapiens GSE40591 16,342
BRCA1 TC-32 GEO Homo sapiens GSE87324 3,286
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks

ReMap is a database of transcriptional regulators peaks derived from curated ChIP-seq, ChIP-exo, DAP-seq experiments in Human and Thaliana.

You are using the 2020 ReMap (3rd) release.
The ReMap catalogues (2020, 2018, 2015) are under CC BY-NC 4.0 international license, while ReMapEnrich, remap-pipeline under GNU GPLv3 licence.

Inserm TAGC
AMU AMU-MESO

This work was granted access to the HPC resources of Aix-Marseille Université financed by the project Equip@Meso (ANR-10-EQPX-29-01) of the program "Investissements d’Avenir" supervised by the Agence Nationale de la Recherche.