BRCA1
Information BRCA1
- Description
This gene encodes a nuclear phosphoprotein that plays a role in maintaining genomic stability, and it also acts as a tumor suppressor. The encoded protein combines with other tumor suppressors, DNA damage sensors, and signal transducers to form a large multi-subunit protein complex known as the BRCA1-associated genome surveillance complex (BASC). This gene product associates with RNA polymerase II, and through the C-terminal domain, also interacts with histone deacetylase complexes. This protein thus plays a role in transcription, DNA repair of double-stranded breaks, and recombination. Mutations in this gene are responsible for approximately 40% of inherited breast cancers and more than 80% of inherited breast and ovarian cancers. Alternative splicing plays a role in modulating the subcellular localization and physiological function of this gene. Many alternatively spliced transcript variants, some of which are disease-associated mutations, have been described for this gene, but the full-length natures of only some of these variants has been described. A related pseudogene, which is also located on chromosome 17, has been identified. [provided by RefSeq, May 2009]
- Full Name
BRCA1 DNA repair associated
- Source NCBI
ReMap Statistics
- Datasets
- 9
- Biotypes
- 9
- Peaks
- 72,574
- Non-redundant peaks
- 55,924
TF Classification
- Super Class
- Unknown
- Class
- Unknown
- Familly
- Unknown
- Sub Familly
- Unknown
Source TFClass
External IDs
- JASPAR
- Ensembl
- ENSG00000012048
- UniProt
- P38398
- Genevisible
- P38398
- RefSeq
- NM_007294
- Aliases
- BRCAI; BRCC1; BROVCA1; FANCS; IRIS; PNCA4; PPP1R53; PSCP; RNF53
Datasets Table for BRCA1
Target name | Target modification | Ecotype/Strain | Biotype | Biotype modification | Source | Species | Experiment | Peaks |
---|---|---|---|---|---|---|---|---|
BRCA1 | GM12878 | ENCODE | Homo sapiens | ENCSR000DZS | 486 | |||
BRCA1 | A-549 | ENCODE | Homo sapiens | ENCSR857KDI | 2,325 | |||
BRCA1 | Hep-G2 | ENCODE | Homo sapiens | ENCSR000EDY | 4,011 | |||
BRCA1 | K-562 | ENCODE | Homo sapiens | ENCSR223MLH | 27,174 | |||
BRCA1 | WA01 | ENCODE | Homo sapiens | ENCSR000EBX | 2,361 | |||
BRCA1 | HeLa-S3 | ENCODE | Homo sapiens | ENCSR000EDB | 13,006 | |||
BRCA1 | U2OS | GEO | Homo sapiens | GSE87324 | 3,583 | |||
BRCA1 | MCF-10A | GEO | Homo sapiens | GSE40591 | 16,342 | |||
BRCA1 | TC-32 | GEO | Homo sapiens | GSE87324 | 3,286 | |||
Target name | Target modification | Ecotype/Strain | Biotype | Biotype modification | Source | Species | Experiment | Peaks |