AFF1

Information AFF1

Description

This gene encodes a member of the AF4/ lymphoid nuclear protein related to the Fragile X E syndrome (FRAXE) family of proteins, which have been implicated in human childhood lymphoblastic leukemia, fragile chromosome X intellectual disability, and ataxia. It is the prevalent mixed-lineage leukemia fusion gene associated with spontaneous acute lymphoblastic leukemia. Members of this family have three conserved domains: an N-terminal homology domain, an AF4/ lymphoid nuclear protein domain, and a C-terminal homology domain. The protein functions as a regulator of RNA polymerase II-mediated transcription through elongation and chromatin remodeling functions. Through RNA interference screens, this gene has been shown to promote the expression of CD133, a plasma membrane glycoprotein required for leukemia cell survival. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2017]

Full Name

AF4/FMR2 family member 1

Source NCBI

ReMap Statistics

Datasets
4
Biotypes
3
Peaks
36,060
Non-redundant peaks
30,854

TF Classification

Super Class
NA
Class
NA
Familly
NA
Sub Familly
NA

Source TFClass

External IDs

JASPAR
Ensembl
ENSG00000172493
UniProt
P51825
Genevisible
P51825
RefSeq
NM_001166693
Aliases
AF-4; AF4; MLLT2; PBM1
All peaks AFF1
Download BED file
Non redundant peaks AFF1
Download BED file
SEQUENCES AFF1
Download FASTA file
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Datasets Table for AFF1

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
AFF1 K-562 ENCODE Homo sapiens ENCSR241LIH 9,040
AFF1 K-562 ENCODE Homo sapiens ENCSR426URK 25,369
AFF1 MV4-11 GEO Homo sapiens GSE79899 288
AFF1 L826 GEO Homo sapiens GSE83671 1,363
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks

ReMap is a database of transcriptional regulators peaks derived from curated ChIP-seq, ChIP-exo, DAP-seq experiments in Human and Thaliana.

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The ReMap catalogues (2020, 2018, 2015) are under CC BY-NC 4.0 international license, while ReMapEnrich, remap-pipeline under GNU GPLv3 licence.

Inserm TAGC
AMU AMU-MESO

This work was granted access to the HPC resources of Aix-Marseille Université financed by the project Equip@Meso (ANR-10-EQPX-29-01) of the program "Investissements d’Avenir" supervised by the Agence Nationale de la Recherche.