Col-0_whole-plant

Information for Col-0_whole-plant

Description

A plant structure (PO:0005679) which is a whole organism.

Source BRENDA Tissue Ontology (BTO)

ReMap Statistics

Datasets
7
Transcriptional Factors
6
Peaks
23,702
Non-redundant peaks
23,348
All peaks Col-0_whole-plant
Download BED file
Non redundant Col-0_whole-plant
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Non redundant whole-plant
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CRMs whole-plant
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Datasets Table for whole-plant

Biotype Biotype modification Ecotype Target name Target modification Source Species Experiment Peaks
Col-0_whole-plant 18d Col-0 APRR5 GEO Arabidopsis thaliana GSE36361 Download (8,167)
Col-0_whole-plant 18d Col-0 SOC1 GEO Arabidopsis thaliana GSE45846 Download (1,537)
Col-0_whole-plant 3w Col-0 AL5 GEO Arabidopsis thaliana GSE56706 Download (664)
Col-0_whole-plant 3w-mutant Col-0 AL5 GEO Arabidopsis thaliana GSE56706 Download (308)
Col-0_whole-plant 10d Col-0 HAT3 GEO Arabidopsis thaliana GSE65876 Download (140)
Col-0_whole-plant 2w-wt Col-0 H3-3 GEO Arabidopsis thaliana GSE87917 Download (13,983)
Col-0_whole-plant 30h Col-0 H3K27me3 GEO Arabidopsis thaliana GSE84483 Download (9,719)
Biotype Biotype modification Ecotype Target name Target modification Source Species Experiment Peaks

ReMap is a database of transcriptional regulators peaks derived from curated ChIP-seq, ChIP-exo, DAP-seq experiments in Human and Thaliana.

You are using the 2020 ReMap (3rd) release.
The ReMap catalogues (2020, 2018, 2015) are under CC BY-NC 4.0 international license, while ReMapEnrich, remap-pipeline under GNU GPLv3 licence.

Inserm TAGC
AMU AMU-MESO

This work was granted access to the HPC resources of Aix-Marseille Université financed by the project Equip@Meso (ANR-10-EQPX-29-01) of the program "Investissements d’Avenir" supervised by the Agence Nationale de la Recherche.