XBP1

Information XBP1

Description

This gene encodes a transcription factor that regulates MHC class II genes by binding to a promoter element referred to as an X box. This gene product is a bZIP protein, which was also identified as a cellular transcription factor that binds to an enhancer in the promoter of the T cell leukemia virus type 1 promoter. It may increase expression of viral proteins by acting as the DNA binding partner of a viral transactivator. It has been found that upon accumulation of unfolded proteins in the endoplasmic reticulum (ER), the mRNA of this gene is processed to an active form by an unconventional splicing mechanism that is mediated by the endonuclease inositol-requiring enzyme 1 (IRE1). The resulting loss of 26 nt from the spliced mRNA causes a frame-shift and an isoform XBP1(S), which is the functionally active transcription factor. The isoform encoded by the unspliced mRNA, XBP1(U), is constitutively expressed, and thought to function as a negative feedback regulator of XBP1(S), which shuts off transcription of target genes during the recovery phase of ER stress. A pseudogene of XBP1 has been identified and localized to chromosome 5. [provided by RefSeq, Jul 2008]

Full Name

X-box binding protein 1

Source NCBI

ReMap Statistics

Datasets
4
Biotypes
3
Peaks
477,136
Non-redundant peaks
408,126

TF Classification

Super Class
Basic domains
Class
Basic leucine zipper factors (bZIP)
Familly
XBP-1-related factors
Sub Familly
None

Source TFClass

External IDs

JASPAR
MA0844
Ensembl
ENSG00000100219
UniProt
P17861
Genevisible
P17861
RefSeq
NM_001079539
Aliases
TREB-5; TREB5; XBP-1; XBP2
All peaks XBP1
Download BED file
Non redundant peaks XBP1
Download BED file
SEQUENCES XBP1
Download FASTA file
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Datasets Table for XBP1

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
XBP1 HS578T HYPO_GLUDEP GEO Homo sapiens GSE49952 3,929
XBP1 MDA-MB-231 GEO Homo sapiens GSE49952 216,881
XBP1 MDA-MB-231 HYPO_GLUDEP GEO Homo sapiens GSE49952 256,241
XBP1 T-47D HYPO_GLUDEP GEO Homo sapiens GSE49952 85
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks

ReMap is a database of transcriptional regulators peaks derived from curated ChIP-seq, ChIP-exo, DAP-seq experiments in Human and Thaliana.

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The ReMap catalogues (2020, 2018, 2015) are under CC BY-NC 4.0 international license, while ReMapEnrich, remap-pipeline under GNU GPLv3 licence.

Inserm TAGC
AMU AMU-MESO

This work was granted access to the HPC resources of Aix-Marseille Université financed by the project Equip@Meso (ANR-10-EQPX-29-01) of the program "Investissements d’Avenir" supervised by the Agence Nationale de la Recherche.