VDR

Information VDR

Description

This gene encodes vitamin D3 receptor, which is a member of the nuclear hormone receptor superfamily of ligand-inducible transcription factors. This receptor also functions as a receptor for the secondary bile acid, lithocholic acid. Downstream targets of vitamin D3 receptor are principally involved in mineral metabolism, though this receptor regulates a variety of other metabolic pathways, such as those involved in immune response and cancer. Mutations in this gene are associated with type II vitamin D-resistant rickets. A single nucleotide polymorphism in the initiation codon results in an alternate translation start site three codons downstream. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. A recent study provided evidence for translational readthrough in this gene, and expression of an additional C-terminally extended isoform via the use of an alternative in-frame translation termination codon. [provided by RefSeq, Jun 2018]

Full Name

vitamin D receptor

Source NCBI

ReMap Statistics

Datasets
16
Biotypes
5
Peaks
140,252
Non-redundant peaks
102,067

TF Classification

Super Class
Zinc-coordinating DNA-binding domains
Class
Nuclear receptors with C4 zinc fingers
Familly
Thyroid hormone receptor-related factors (NR1)
Sub Familly
Vitamin D receptor (NR1I)

Source TFClass

External IDs

JASPAR
MA0693
Ensembl
ENSG00000111424
UniProt
P11473
Genevisible
P11473
RefSeq
NM_000376
Aliases
NR1I1; PPP1R163
All peaks VDR
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Non redundant peaks VDR
Download BED file
SEQUENCES VDR
Download FASTA file
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Datasets Table for VDR

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
VDR LCLGM10861 CALCITRIOL GEO Homo sapiens GSE22484 6,003
VDR LNCaP GEO Homo sapiens GSE64656 21,327
VDR LS180 GEO Homo sapiens GSE31939 1,173
VDR LS180 125 GEO Homo sapiens GSE31939 6,130
VDR LX2 GEO Homo sapiens GSE38103 2,449
VDR LX2 CALCIPOTRIOL GEO Homo sapiens GSE38103 2,065
VDR LX2 CALCIPOTRIOL_TGFB1 GEO Homo sapiens GSE38103 28,598
VDR THP-1 GEO Homo sapiens GSE51181 9
VDR THP-1 1H_125D GEO Homo sapiens GSE51181 170
VDR THP-1 2H_125D GEO Homo sapiens GSE51181 249
VDR THP-1 GEO Homo sapiens GSE53041 316
VDR THP-1 CAL GEO Homo sapiens GSE53041 1,039
VDR THP-1 1d_1-25-OH-2D3 GEO Homo sapiens GSE89431 57,025
VDR THP-1 2h_1-25-OH-2D3 GEO Homo sapiens GSE89431 3,720
VDR THP-1 EtOH_1d GEO Homo sapiens GSE89431 8,672
VDR THP-1 EtOH_2h GEO Homo sapiens GSE89431 1,307
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks

ReMap is a database of transcriptional regulators peaks derived from curated ChIP-seq, ChIP-exo, DAP-seq experiments in Human and Thaliana.

You are using the 2020 ReMap (3rd) release.
The ReMap catalogues (2020, 2018, 2015) are under CC BY-NC 4.0 international license, while ReMapEnrich, remap-pipeline under GNU GPLv3 licence.

Inserm TAGC
AMU AMU-MESO

This work was granted access to the HPC resources of Aix-Marseille Université financed by the project Equip@Meso (ANR-10-EQPX-29-01) of the program "Investissements d’Avenir" supervised by the Agence Nationale de la Recherche.