TBP

Information TBP

Description

Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes TBP, the TATA-binding protein. A distinctive feature of TBP is a long string of glutamines in the N-terminus. This region of the protein modulates the DNA binding activity of the C terminus, and modulation of DNA binding affects the rate of transcription complex formation and initiation of transcription. The number of CAG repeats encoding the polyglutamine tract is usually 25-42, and expansion of the number of repeats to 45-66 increases the length of the polyglutamine string and is associated with spinocerebellar ataxia 17, a neurodegenerative disorder classified as a polyglutamine disease. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2016]

Full Name

TATA-box binding protein

Source NCBI

ReMap Statistics

Datasets
12
Biotypes
7
Peaks
198,942
Non-redundant peaks
103,812

TF Classification

Super Class
beta-Sheet binding to DNA
Class
TATA-binding proteins
Familly
TBP-related factors
Sub Familly
None

Source TFClass

External IDs

JASPAR
Ensembl
ENSG00000112592
UniProt
P20226
Genevisible
P20226
RefSeq
NM_001172085
Aliases
GTF2D; GTF2D1; HDL4; SCA17; TFIID
All peaks TBP
Download BED file
Non redundant peaks TBP
Download BED file
SEQUENCES TBP
Download FASTA file
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Datasets Table for TBP

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
TBP GM12878 ENCODE Homo sapiens ENCSR000DZZ 7,211
TBP Hep-G2 ENCODE Homo sapiens ENCSR000EEL 27,569
TBP K-562 ENCODE Homo sapiens ENCSR000EHA 27,416
TBP WA01 ENCODE Homo sapiens ENCSR000ECB 31,560
TBP HeLa-S3 ENCODE Homo sapiens ENCSR000EDD 31,393
TBP K-562 GEO Homo sapiens GSE55306 35,883
TBP HBTEC DM_MOI100_12hpi GEO Homo sapiens GSE116772 705
TBP HBTEC DM_MOI100_18hpi GEO Homo sapiens GSE116772 363
TBP HBTEC MOI20_12hpi GEO Homo sapiens GSE116772 8,497
TBP HBTEC MOI20_18hpi GEO Homo sapiens GSE116772 12,637
TBP HBTEC MOI5_dl312_18hpi GEO Homo sapiens GSE116772 677
TBP ME-1 GEO Homo sapiens GSE46044 15,031
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks

ReMap is a database of transcriptional regulators peaks derived from curated ChIP-seq, ChIP-exo, DAP-seq experiments in Human and Thaliana.

You are using the 2020 ReMap (3rd) release.
The ReMap catalogues (2020, 2018, 2015) are under CC BY-NC 4.0 international license, while ReMapEnrich, remap-pipeline under GNU GPLv3 licence.

Inserm TAGC
AMU AMU-MESO

This work was granted access to the HPC resources of Aix-Marseille Université financed by the project Equip@Meso (ANR-10-EQPX-29-01) of the program "Investissements d’Avenir" supervised by the Agence Nationale de la Recherche.