RFX5

Information RFX5

Description

A lack of MHC-II expression results in a severe immunodeficiency syndrome called MHC-II deficiency, or the bare lymphocyte syndrome (BLS; MIM 209920). At least 4 complementation groups have been identified in B-cell lines established from patients with BLS. The molecular defects in complementation groups B, C, and D all lead to a deficiency in RFX, a nuclear protein complex that binds to the X box of MHC-II promoters. The lack of RFX binding activity in complementation group C results from mutations in the RFX5 gene encoding the 75-kD subunit of RFX (Steimle et al., 1995). RFX5 is the fifth member of the growing family of DNA-binding proteins sharing a novel and highly characteristic DNA-binding domain called the RFX motif. Multiple alternatively spliced transcript variants have been found but the full-length natures of only two have been determined. [provided by RefSeq, Jul 2008]

Full Name

regulatory factor X5

Source NCBI

ReMap Statistics

Datasets
9
Biotypes
9
Peaks
79,364
Non-redundant peaks
50,319

TF Classification

Super Class
Helix-turn-helix domains
Class
Fork head / winged helix factors
Familly
RFX-related factors
Sub Familly
None

Source TFClass

External IDs

JASPAR
MA0510
Ensembl
ENSG00000143390
UniProt
P48382
Genevisible
P48382
RefSeq
NM_000449
Aliases
All peaks RFX5
Download BED file
Non redundant peaks RFX5
Download BED file
SEQUENCES RFX5
Download FASTA file
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Datasets Table for RFX5

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
RFX5 GM12878 ENCODE Homo sapiens ENCSR000DZW 1,151
RFX5 A-549 ENCODE Homo sapiens ENCSR064LJN 5,152
RFX5 Hep-G2 ENCODE Homo sapiens ENCSR000EEA 14,171
RFX5 IMR-90 ENCODE Homo sapiens ENCSR000EFD 5,855
RFX5 K-562 ENCODE Homo sapiens ENCSR000EGO 2,334
RFX5 MCF-7 ENCODE Homo sapiens ENCSR924TVL 10,185
RFX5 SK-N-SH ENCODE Homo sapiens ENCSR000EHY 6,132
RFX5 WA01 ENCODE Homo sapiens ENCSR000ECF 1,883
RFX5 HeLa-S3 ENCODE Homo sapiens ENCSR000ECX 32,501
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks

ReMap is a database of transcriptional regulators peaks derived from curated ChIP-seq, ChIP-exo, DAP-seq experiments in Human and Thaliana.

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The ReMap catalogues (2020, 2018, 2015) are under CC BY-NC 4.0 international license, while ReMapEnrich, remap-pipeline under GNU GPLv3 licence.

Inserm TAGC
AMU AMU-MESO

This work was granted access to the HPC resources of Aix-Marseille Université financed by the project Equip@Meso (ANR-10-EQPX-29-01) of the program "Investissements d’Avenir" supervised by the Agence Nationale de la Recherche.