PAX5

Information PAX5

Description

This gene encodes a member of the paired box (PAX) family of transcription factors. The central feature of this gene family is a novel, highly conserved DNA-binding motif, known as the paired box. Paired box transcription factors are important regulators in early development, and alterations in the expression of their genes are thought to contribute to neoplastic transformation. This gene encodes the B-cell lineage specific activator protein that is expressed at early, but not late stages of B-cell differentiation. Its expression has also been detected in developing CNS and testis and so the encoded protein may also play a role in neural development and spermatogenesis. This gene is located at 9p13, which is involved in t(9;14)(p13;q32) translocations recurring in small lymphocytic lymphomas of the plasmacytoid subtype, and in derived large-cell lymphomas. This translocation brings the potent E-mu enhancer of the IgH gene into close proximity of the PAX5 promoter, suggesting that the deregulation of transcription of this gene contributes to the pathogenesis of these lymphomas. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2013]

Full Name

paired box 5

Source NCBI

ReMap Statistics

Datasets
7
Biotypes
6
Peaks
272,028
Non-redundant peaks
181,343

TF Classification

Super Class
Helix-turn-helix domains
Class
Paired box factors
Familly
Paired domain only
Sub Familly
PAX-2-like factors (partial homeobox)

Source TFClass

External IDs

JASPAR
MA0014
Ensembl
ENSG00000196092
UniProt
Q02548
Genevisible
Q02548
RefSeq
NM_001280547
Aliases
ALL3; BSAP
All peaks PAX5
Download BED file
Non redundant peaks PAX5
Download BED file
SEQUENCES PAX5
Download FASTA file
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Datasets Table for PAX5

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
PAX5 fetal testis GEO Homo sapiens GSE100639 75,907
PAX5 GM12878 ENCODE Homo sapiens ENCSR000BHD 71,119
PAX5 GM12878 ENCODE Homo sapiens ENCSR000BHJ 65,539
PAX5 GM12891 ENCODE Homo sapiens ENCSR000BJH 21,246
PAX5 GM12892 ENCODE Homo sapiens ENCSR000BJI 30,353
PAX5 DOHH2 GEO Homo sapiens GSE69558 1,325
PAX5 OCI-Ly7 GEO Homo sapiens GSE69558 6,539
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks

ReMap is a database of transcriptional regulators peaks derived from curated ChIP-seq, ChIP-exo, DAP-seq experiments in Human and Thaliana.

You are using the 2020 ReMap (3rd) release.
The ReMap catalogues (2020, 2018, 2015) are under CC BY-NC 4.0 international license, while ReMapEnrich, remap-pipeline under GNU GPLv3 licence.

Inserm TAGC
AMU AMU-MESO

This work was granted access to the HPC resources of Aix-Marseille Université financed by the project Equip@Meso (ANR-10-EQPX-29-01) of the program "Investissements d’Avenir" supervised by the Agence Nationale de la Recherche.