NIPBL

Information NIPBL

Description

This gene encodes the homolog of the Drosophila melanogaster Nipped-B gene product and fungal Scc2-type sister chromatid cohesion proteins. The Drosophila protein facilitates enhancer-promoter communication of remote enhancers and plays a role in developmental regulation. It is also homologous to a family of chromosomal adherins with broad roles in sister chromatid cohesion, chromosome condensation, and DNA repair. The human protein has a bipartite nuclear targeting sequence and a putative HEAT repeat. Condensins, cohesins and other complexes with chromosome-related functions also contain HEAT repeats. Mutations in this gene result in Cornelia de Lange syndrome, a disorder characterized by dysmorphic facial features, growth delay, limb reduction defects, and cognitive disability. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

Full Name

NIPBL cohesin loading factor

Source NCBI

ReMap Statistics

Datasets
15
Biotypes
9
Peaks
184,778
Non-redundant peaks
106,079

TF Classification

Super Class
Unknown
Class
Unknown
Familly
Unknown
Sub Familly
Unknown

Source TFClass

External IDs

JASPAR
Ensembl
ENSG00000164190
UniProt
Q6KC79
Genevisible
Q6KC79
RefSeq
NM_015384
Aliases
CDLS; CDLS1; DKFZp434L1319; FLJ11203; FLJ12597; FLJ13354; FLJ13648; IDN3; IDN3-B; Scc2
All peaks NIPBL
Download BED file
Non redundant peaks NIPBL
Download BED file
SEQUENCES NIPBL
Download FASTA file
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Datasets Table for NIPBL

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
NIPBL WA09 GEO Homo sapiens GSE105028 4,138
NIPBL WA09 heat-shock GEO Homo sapiens GSE105028 2,071
NIPBL HCT-116 RAD21-mAC GEO Homo sapiens GSE104888 29,774
NIPBL HCT-116 RAD21-mAC_500uM_auxin GEO Homo sapiens GSE104888 33,525
NIPBL GM12878 GEO Homo sapiens GSE93080 25,070
NIPBL GP5D GEO Homo sapiens GSE51234 26,531
NIPBL GP5D SIRAD21 GEO Homo sapiens GSE51234 4,500
NIPBL hESC GEO Homo sapiens GSE64758 3,857
NIPBL hESC activin GEO Homo sapiens GSE64758 4,367
NIPBL hESC WNT3A GEO Homo sapiens GSE64758 4,106
NIPBL hESC WNT3A_ACTIVIN GEO Homo sapiens GSE64758 7,923
NIPBL LCL GEO Homo sapiens GSE38395 11,191
NIPBL A-549 GEO Homo sapiens GSE76893 13,317
NIPBL Hep-G2 GEO Homo sapiens GSE76893 7,549
NIPBL MCF-7 GEO Homo sapiens GSE76893 6,859
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks

ReMap is a database of transcriptional regulators peaks derived from curated ChIP-seq, ChIP-exo, DAP-seq experiments in Human and Thaliana.

You are using the 2020 ReMap (3rd) release.
The ReMap catalogues (2020, 2018, 2015) are under CC BY-NC 4.0 international license, while ReMapEnrich, remap-pipeline under GNU GPLv3 licence.

Inserm TAGC
AMU AMU-MESO

This work was granted access to the HPC resources of Aix-Marseille Université financed by the project Equip@Meso (ANR-10-EQPX-29-01) of the program "Investissements d’Avenir" supervised by the Agence Nationale de la Recherche.