JKD

Information JKD

Description

JKD is a nuclear-localized putative transcription factor with three zinc finger domains. jkd mutants show a number of root patterning defects including ectopic periclinal divisions in the cortex, increased cell numbers in the cortical and epidermal layers, a disrupted QC marker expression pattern, and disorganized QC and columella cells. jkd mutants also have a reduced number of meristematic cells in their roots. JKD can interact with the SCR and SHR proteins implicated in root patterning, as well as another zinc finger transcription factor, MAGPIE. All of these interactions require the first zinc finger in JKD according to a Y2H assay. There are also transcriptional interactions among these proteins. The initiation of JKD transcription does not appear to depend on SCR and SHR, but later expression in the post-embryonic QC cells and ground tissue initials is reduced in scr and shr mutants. JKD also appears to be required for SCR transcription beginning in the embryo. There is also some evidence that JKD plays a role in promoting the movement of SHR into the nucleus, particularly in QC cells, but this may be indirect.

Full Name

C2H2-like zinc finger protein

Source NCBI

ReMap Statistics

Datasets
1
Biotypes
1
Peaks
226
Non-redundant peaks
226

TF Classification

Familly
C2H2
Sub Familly
putative protein

Source AtTFDB

External IDs

JASPAR
MA1156
Ensembl
AT5G03150
UniProt
Q700D2
Genevisible
Q700D2
RefSeq
NM_120393.6
Aliases
All peaks JKD
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Non redundant peaks JKD
Download BED file
SEQUENCES JKD
Download FASTA file
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Datasets Table for JKD

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
JKD Col-0 Col-0_leaves tnt_col GEO Arabidopsis thaliana GSE60141 226
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks

ReMap is a database of transcriptional regulators peaks derived from curated ChIP-seq, ChIP-exo, DAP-seq experiments in Human and Thaliana.

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The ReMap catalogues (2020, 2018, 2015) are under CC BY-NC 4.0 international license, while ReMapEnrich, remap-pipeline under GNU GPLv3 licence.

Inserm TAGC
AMU AMU-MESO

This work was granted access to the HPC resources of Aix-Marseille Université financed by the project Equip@Meso (ANR-10-EQPX-29-01) of the program "Investissements d’Avenir" supervised by the Agence Nationale de la Recherche.