IKZF1

Information IKZF1

Description

This gene encodes a transcription factor that belongs to the family of zinc-finger DNA-binding proteins associated with chromatin remodeling. The expression of this protein is restricted to the fetal and adult hemo-lymphopoietic system, and it functions as a regulator of lymphocyte differentiation. Several alternatively spliced transcript variants encoding different isoforms have been described for this gene. Most isoforms share a common C-terminal domain, which contains two zinc finger motifs that are required for hetero- or homo-dimerization, and for interactions with other proteins. The isoforms, however, differ in the number of N-terminal zinc finger motifs that bind DNA and in nuclear localization signal presence, resulting in members with and without DNA-binding properties. Only a few isoforms contain the requisite three or more N-terminal zinc motifs that confer high affinity binding to a specific core DNA sequence element in the promoters of target genes. The non-DNA-binding isoforms are largely found in the cytoplasm, and are thought to function as dominant-negative factors. Overexpression of some dominant-negative isoforms have been associated with B-cell malignancies, such as acute lymphoblastic leukemia (ALL). [provided by RefSeq, May 2014]

Full Name

IKAROS family zinc finger 1

Source NCBI

ReMap Statistics

Datasets
9
Biotypes
5
Peaks
362,190
Non-redundant peaks
208,952

TF Classification

Super Class
Zinc-coordinating DNA-binding domains
Class
C2H2 zinc finger factors
Familly
Factors with multiple dispersed zinc fingers
Sub Familly
Ikaros

Source TFClass

External IDs

JASPAR
Ensembl
ENSG00000185811
UniProt
Q13422
Genevisible
Q13422
RefSeq
NM_001220765
Aliases
CVID13; Hs.54452; IK1; IKAROS; LYF1; LyF-1; PPP1R92; PRO0758; ZNFN1A1; hIk-1
All peaks IKZF1
Download BED file
Non redundant peaks IKZF1
Download BED file
SEQUENCES IKZF1
Download FASTA file
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Datasets Table for IKZF1

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
IKZF1 GM12878 ENCODE Homo sapiens ENCSR000EUJ 1,006
IKZF1 GM12878 ENCODE Homo sapiens ENCSR441VHN 83,804
IKZF1 GM12878 ENCODE Homo sapiens ENCSR874AFU 86,020
IKZF1 Hep-G2 ENCODE Homo sapiens ENCSR278JQG 3,536
IKZF1 K-562 ENCODE Homo sapiens ENCSR395HWC 73,796
IKZF1 K-562 ENCODE Homo sapiens ENCSR948VFL 82,095
IKZF1 HSPC GEO Homo sapiens GSE26014 1,682
IKZF1 BCR-ABL1 GEO Homo sapiens GSE58825 7,935
IKZF1 BCR-ABL1 LAX2 GEO Homo sapiens GSE58825 22,316
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks

ReMap is a database of transcriptional regulators peaks derived from curated ChIP-seq, ChIP-exo, DAP-seq experiments in Human and Thaliana.

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The ReMap catalogues (2020, 2018, 2015) are under CC BY-NC 4.0 international license, while ReMapEnrich, remap-pipeline under GNU GPLv3 licence.

Inserm TAGC
AMU AMU-MESO

This work was granted access to the HPC resources of Aix-Marseille Université financed by the project Equip@Meso (ANR-10-EQPX-29-01) of the program "Investissements d’Avenir" supervised by the Agence Nationale de la Recherche.