HOXC5

Information HOXC5

Description

This gene belongs to the homeobox family of genes. The homeobox genes encode a highly conserved family of transcription factors that play an important role in morphogenesis in all multicellular organisms. Mammals possess four similar homeobox gene clusters, HOXA, HOXB, HOXC and HOXD, which are located on different chromosomes and consist of 9 to 11 genes arranged in tandem. This gene, HOXC5, is one of several homeobox HOXC genes located in a cluster on chromosome 12. Three genes, HOXC5, HOXC4 and HOXC6, share a 5' non-coding exon. Transcripts may include the shared exon spliced to the gene-specific exons, or they may include only the gene-specific exons. Two alternatively spliced variants have been described for HOXC5. The transcript variant which includes the shared exon apparently doesn't encode a protein. The protein-coding transcript variant contains gene-specific exons only. [provided by RefSeq, Jul 2008]

Full Name

homeobox C5

Source NCBI

ReMap Statistics

Datasets
2
Biotypes
1
Peaks
87,054
Non-redundant peaks
84,724

TF Classification

Super Class
NA
Class
NA
Familly
NA
Sub Familly
NA

Source TFClass

External IDs

JASPAR
Ensembl
ENSG00000172789
UniProt
Q00444
Genevisible
Q00444
RefSeq
NM_018953
Aliases
CP11; HOX3; HOX3D
All peaks HOXC5
Download BED file
Non redundant peaks HOXC5
Download BED file
SEQUENCES HOXC5
Download FASTA file
DOWNLOAD All ReMap
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Datasets Table for HOXC5

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
HOXC5 PC-3 GEO Homo sapiens GSE97570 84,072
HOXC5 PC-3 Hoxc5overexp GEO Homo sapiens GSE97570 2,982
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks

ReMap is a database of transcriptional regulators peaks derived from curated ChIP-seq, ChIP-exo, DAP-seq experiments in Human and Thaliana.

You are using the 2020 ReMap (3rd) release.
The ReMap catalogues (2020, 2018, 2015) are under CC BY-NC 4.0 international license, while ReMapEnrich, remap-pipeline under GNU GPLv3 licence.

Inserm TAGC
AMU AMU-MESO

This work was granted access to the HPC resources of Aix-Marseille Université financed by the project Equip@Meso (ANR-10-EQPX-29-01) of the program "Investissements d’Avenir" supervised by the Agence Nationale de la Recherche.