ARID1A

Information ARID1A

Description

This gene encodes a member of the SWI/SNF family, whose members have helicase and ATPase activities and are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI, which is required for transcriptional activation of genes normally repressed by chromatin. It possesses at least two conserved domains that could be important for its function. First, it has a DNA-binding domain that can specifically bind an AT-rich DNA sequence known to be recognized by a SNF/SWI complex at the beta-globin locus. Second, the C-terminus of the protein can stimulate glucocorticoid receptor-dependent transcriptional activation. It is thought that the protein encoded by this gene confers specificity to the SNF/SWI complex and may recruit the complex to its targets through either protein-DNA or protein-protein interactions. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

Full Name

AT-rich interaction domain 1A

Source NCBI

ReMap Statistics

Datasets
4
Biotypes
3
Peaks
106,092
Non-redundant peaks
87,679

TF Classification

Super Class
Helix-turn-helix domains
Class
ARID domain factors
Familly
ARID-related factors
Sub Familly
ARID1

Source TFClass

External IDs

JASPAR
Ensembl
ENSG00000117713
UniProt
O14497
Genevisible
O14497
RefSeq
NM_006015
Aliases
B120; BAF250; BAF250a; BM029; C10rf4; C1orf4; CSS2; ELD; MRD14; OSA1; P270; SMARCF1; hELD; hOSA1
All peaks ARID1A
Download BED file
Non redundant peaks ARID1A
Download BED file
SEQUENCES ARID1A
Download FASTA file
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Datasets Table for ARID1A

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
ARID1A RMG-I GEO Homo sapiens GSE104545 47,140
ARID1A Hep-G2 GEO Homo sapiens GSE69566 17,397
ARID1A LNCaP GEO Homo sapiens GSE94682 13,289
ARID1A LNCaP r1881 GEO Homo sapiens GSE94682 28,266
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks

ReMap is a database of transcriptional regulators peaks derived from curated ChIP-seq, ChIP-exo, DAP-seq experiments in Human and Thaliana.

You are using the 2020 ReMap (3rd) release.
The ReMap catalogues (2020, 2018, 2015) are under CC BY-NC 4.0 international license, while ReMapEnrich, remap-pipeline under GNU GPLv3 licence.

Inserm TAGC
AMU AMU-MESO

This work was granted access to the HPC resources of Aix-Marseille Université financed by the project Equip@Meso (ANR-10-EQPX-29-01) of the program "Investissements d’Avenir" supervised by the Agence Nationale de la Recherche.