H3

Information H3

Description

Histone H3 is a core subunit of the eukaryotic nucleosome complex. Histones are basic nuclear proteins responsible for the nucleosome structure of chromatin. Repeating nucleosome units contain two molecules each of Histones H2A, H2B, H3, and H4 that form an octamer complex around which approximately 146 base pairs of DNA is wrapped. Linker Histone H1 interacts with DNA between nucleosome units in mediating chromatin compaction into higher order structures.

Full Name

Histone H3

Source NCBI

ReMap Statistics

Datasets
40
Biotypes
10
Peaks
796,404
Non-redundant peaks
161,975

TF Classification

Familly
REM
Sub Familly
NA

Source AtTFDB

External IDs

JASPAR
Ensembl
UniProt
Genevisible
RefSeq
Aliases
Histone H3

External links
All peaks H3
Download BED file
Non redundant peaks H3
Download BED file
SEQUENCES H3
Download FASTA file
DOWNLOAD All ReMap
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Datasets Table for H3

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
H3 Col-x-Ler Col-x-Ler_endosperm 20d-1 GEO Arabidopsis thaliana GSE66585 342
H3 Col-0 Col-0_rosette-leaves 21d-wt-watered GEO Arabidopsis thaliana GSE68370 33,501
H3 Col-0 Col-0_rosette-leaves 21d-wt-drought GEO Arabidopsis thaliana GSE68370 33,789
H3 Col-0 Col-0_rosette-leaves 21d-mutant-watered GEO Arabidopsis thaliana GSE68370 23,260
H3 Col-0 Col-0_rosette-leaves 21d-mutant-drought GEO Arabidopsis thaliana GSE68370 23,822
H3 Col-0 Col-0_rosette-leaves GEO Arabidopsis thaliana GSE22276 0
H3 Col-0 Col-0_old-leaves 4w GEO Arabidopsis thaliana GSE36629 5,156
H3 Col-0 Col-0_meristem-young-leaves 4w GEO Arabidopsis thaliana GSE36629 9,961
H3 Col-0 Col-0_flower 5w-mutant GEO Arabidopsis thaliana GSE106942 33,739
H3 Col-0 Col-0_aerial-part 6d-wt GEO Arabidopsis thaliana GSE103924 17,151
H3 Col-0 Col-0_aerial-part 6d-caa39 GEO Arabidopsis thaliana GSE103924 21,949
H3 Col-0 Col-0_aerial-part 3w-wt GEO Arabidopsis thaliana GSE103361 21,459
H3 Col-0 Col-0_aerial-part 3w-pie1-5 GEO Arabidopsis thaliana GSE103361 24,595
H3 Col-0 Col-0_aerial-part 3w-pkl-1 GEO Arabidopsis thaliana GSE103361 24,726
H3 Col-0 Col-0_aerial-part 3w-clf-28 GEO Arabidopsis thaliana GSE103361 29,036
H3 Col-0 Col-0_endosperm 4d-wt-x-wt GEO Arabidopsis thaliana GSE100011 6,736
H3 Col-0 Col-0_seedling 10d-H3-KD GEO Arabidopsis thaliana GSE96834 32,022
H3 Col-0 Col-0_seedling 3w-wt GEO Arabidopsis thaliana GSE37644 32,220
H3 Col-0 Col-0_seedling 3w-crt1 GEO Arabidopsis thaliana GSE37644 33,528
H3 Col-0 Col-0_seedling 3w-crh6 GEO Arabidopsis thaliana GSE37644 30,440
H3 Col-0 Col-0_seedling 18d-wt GEO Arabidopsis thaliana GSE124414 16,565
H3 Col-0 Col-0_seedling 18d-hdc1 GEO Arabidopsis thaliana GSE124414 17,116
H3 Col-0 Col-0_seedling 18d-hda6 GEO Arabidopsis thaliana GSE124414 19,500
H3 Col-0 Col-0_seedling 18d-hda19 GEO Arabidopsis thaliana GSE124414 16,580
H3 Col-0 Col-0_seedling 10-12d-wt GEO Arabidopsis thaliana GSE114009 19,517
H3 Col-0 Col-0_seedling 10-12d-suvh56 GEO Arabidopsis thaliana GSE114009 12,182
H3 Col-0 Col-0_seedling 10-12d-suvh5 GEO Arabidopsis thaliana GSE114009 17,152
H3 Col-0 Col-0_seedling 10-12d-kyp-suvh5-suvh6 GEO Arabidopsis thaliana GSE114009 20,118
H3 Col-0 Col-0_seedling 10-12d-kyp GEO Arabidopsis thaliana GSE114009 18,600
H3 Col-0 Col-0_seedling 12d-27c-4h GEO Arabidopsis thaliana GSE79354 15,593
H3 Col-0 Col-0_seedling 12d-27c-1h GEO Arabidopsis thaliana GSE79354 21,768
H3 Col-0 Col-0_seedling 12d-17c-4h GEO Arabidopsis thaliana GSE79354 19,524
H3 Col-0 Col-0_seedling 12d-27c-15min GEO Arabidopsis thaliana GSE79354 19,174
H3 Col-0 Col-0_seedling 12d-17c-1h GEO Arabidopsis thaliana GSE79354 16,102
H3 Col-0 Col-0_seedling 12d-17c-15min GEO Arabidopsis thaliana GSE79354 13,471
H3 Col-x-Ler Col-x-Ler_endosperm 20d-2 GEO Arabidopsis thaliana GSE66585 14,826
H3 Ler-x-Col Ler-x-Col_endosperm 20d-1 GEO Arabidopsis thaliana GSE66585 11,181
H3 Ler-x-Col Ler-x-Col_endosperm 20d-2 GEO Arabidopsis thaliana GSE66585 2,893
H3 Col-0 Col-0_leaves-apical-meristem 5w-16c GEO Arabidopsis thaliana GSE85279 33,419
H3 Col-0 Col-0_leaves-apical-meristem 5w-25c GEO Arabidopsis thaliana GSE85279 32,878
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks

ReMap is a database of transcriptional regulators peaks derived from curated ChIP-seq, ChIP-exo, DAP-seq experiments in Human and Thaliana.

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The ReMap catalogues (2020, 2018, 2015) are under CC BY-NC 4.0 international license, while ReMapEnrich, remap-pipeline under GNU GPLv3 licence.

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This work was granted access to the HPC resources of Aix-Marseille Université financed by the project Equip@Meso (ANR-10-EQPX-29-01) of the program "Investissements d’Avenir" supervised by the Agence Nationale de la Recherche.